Yes, something like this:
TestTranspose97_100_cyclesSSE46_49.exe > results.txt
TestTranspose506x512_evenlines_cyclesSSE46_49.exe >> results.txt
TestTranspose506x512_oddlines_cyclesSSE46_49.exe >> results.txt
But if program ask for user input I think will be more harder to do, if program only echo results to screen this can be like that.
The first ">" create a file and overwrite their contents, the second ">>" will append results at end of created file. Works from ms-dos to new cmd versions.